I didn't end up deleting everything as I had a few files I did not want to reconfigure, but putting the latest versions of the files you linked above seems to have fixed it. Thanks for the help!
Edit: Can't start some games now, assuming that's because of the sigpatches?
Hello, hopefully I am doing this right. Currently have a Switch running 9.1.0 with atmosphere 0.13.0, HBmenu was working fine earlier today. Updated Pokemon Shield with Tinfoil and now going back into the HBmenu crashes atmosphere and only gives me the option to power off or reboot to payload...
@XorTroll, can you provide any insight about fixing my storage? I deleted a game via Goldleaf without thinking about it and I still have the same amount of space as before I deleted it, yet the game doesn't show up anywhere, using 6.0.0 ReinX.