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I agree it's a really dirty methodI was thinking about that as I got up this morning.
What I am now going to do though is a minor tweak to the code (v1.1) that will replace the data not with 0xFFs but with a valid sector from the ISO being read. That way the sector header will not be so easy to detect in a scrubbed disc.
The other alternative is to keep the sector headers 0x400 bytes and blank the rest 0x7c00.
What I would suggest at the moment is that a difference file is created between the two ISOs (in and out) so that there is always the option of recreating the original ISO if there is a problem (that would be a 2 rar set release though - 1 = scrubbed image, 2 = diff file). The Diff file would effectively contain only the 'garbage' but should compress to 4.5G - whatever the scrubbed one contained as data.
How much will these changes affect the compression ratio?