I'm guessing you also need to press a button on your wiimote to switch it back on when returning to Wiiflow? Yeah I've done 3 Wii's for friends with an SD only setup and the same haapens every time on any revision. It's not a deal breaker (I simply tell em to stop being cheapskates and buy an external HD hehe) but is a slight pain - kinda lessens the overall impact of the proggie...
Anyway, got a bit of a plugin problem on my setup: Currently running emuflow on usb, all plugins I use work no probs except for Wii7800, Wiicolem & intvwii (sp), which give me a fail to open rom directory message or similar on the menu... trying to manually browse for the folder doesn't work either (and in the case of wiicolem gives me a code dump), yet all 3 are fine from an sd card...? Again it's no deal breaker as I've now got a retro secondary setup going with these, plus the other oldies on SD, but if there's any ideas on a fix that'd be great... I've changed rom directories (in the plugins too), no dice. Is it just my particular hard drive that's the problem?