It seems like, somehow, you were able to break the level, I found that all the objects are broken. (Except for the ones that actually show correctly ingame)
I fixed the level, you can find it here:
https://www.dropbox.com/s/h15kbt3nhhjag6v/1-1.szs?dl=0
(BTW, if you put flowers on Layer 0/2, they won't show ingame, they have to be on Layer 1!)
It really wasn't a bug in Miyamoto but you, somehow, managed to break the objects.
Here's a new version to assure that you won't be able to break objects anymore:
https://github.com/Gota7/Miyamoto/releases/download/v14/Bugfix_Windows_x86.zip
I fixed the level, you can find it here:
https://www.dropbox.com/s/h15kbt3nhhjag6v/1-1.szs?dl=0
(BTW, if you put flowers on Layer 0/2, they won't show ingame, they have to be on Layer 1!)
It really wasn't a bug in Miyamoto but you, somehow, managed to break the objects.
Here's a new version to assure that you won't be able to break objects anymore:
https://github.com/Gota7/Miyamoto/releases/download/v14/Bugfix_Windows_x86.zip